Difference between revisions of "HPC Installed Software"

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[[Software Update Log]]: Last updated 10/10/2019
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[[Software Update Log]]: Last updated 10/11/2019
  
 
'''Note''': When loading a module we recommend always defining the version you require, and not relying on what you think the ''default'' version might be. See below on how to discover available versions.
 
'''Note''': When loading a module we recommend always defining the version you require, and not relying on what you think the ''default'' version might be. See below on how to discover available versions.
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||[[GPU-Blast]]|| gpu-blast || 1.0 || GPU accelerated version of NCBI-BLAST
 
||[[GPU-Blast]]|| gpu-blast || 1.0 || GPU accelerated version of NCBI-BLAST
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||[[Kraken]]|| kraken || 2.0.8 || Kraken taxonomic sequence classification system
 
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||[[MLST]]|| mlst || 2.0.4 || Multi-Locus Sequence Typing
 
||[[MLST]]|| mlst || 2.0.4 || Multi-Locus Sequence Typing
 
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||[[Kraken]]|| kraken || 2.0.8 || Kraken taxonomic sequence classification system
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||[[MUMmer]]|| mummer || 4.0.0 || A system for rapidly aligning large DNA sequences to one another
 
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||[[RAY]]|| ray || 2.3.1 || Parallel genome assemblies for parallel DNA sequencing
 
||[[RAY]]|| ray || 2.3.1 || Parallel genome assemblies for parallel DNA sequencing

Latest revision as of 17:20, 11 October 2019

Software Update Log: Last updated 10/11/2019

Note: When loading a module we recommend always defining the version you require, and not relying on what you think the default version might be. See below on how to discover available versions.

Installed HPC Software

Application Software Module Name Latest Version Software Description
Ansys Fluent ansys/fluent Currently not available
BarraCUDA barracuda 0.7.0 A sequence mapping software that utilizes GPUs
CGAL cgal 4.6.3 Computational Geometry Algorithms Library
Comsol comsol 5.3 Multiphysics general-purpose simulation software
DENISE denise 1.3 2D time-domain isotropic (visco)elastic FD modeling and full waveform inversion (FWI) code for P/SV-waves
FWT2D fwt2d 4.8 2D Full-Waveform Topography
Gaussian and GaussView gaussian 16 Electronic structure modeling
GPU-Blast gpu-blast 1.0 GPU accelerated version of NCBI-BLAST
Kraken kraken 2.0.8 Kraken taxonomic sequence classification system
MLST mlst 2.0.4 Multi-Locus Sequence Typing
MUMmer mummer 4.0.0 A system for rapidly aligning large DNA sequences to one another
RAY ray 2.3.1 Parallel genome assemblies for parallel DNA sequencing
SAVA sava 1.0 3D seismic finite-difference modelling

Which Software Version

To find the available versions for any software please use: module spider module-name
For example:

[username@tlog2 ~]$ module spider gaussian
---------------------------------------------------------------------------------------------------------------------------------
  gaussian:
---------------------------------------------------------------------------------------------------------------------------------
     Versions:
        gaussian/16.AVX.b01
        gaussian/16.AVX2.b01
        gaussian/103

From the presented list, can can then find details on a specific version:

[username@tlog2 ~]$ module spider gaussian/16.AVX2.b01
---------------------------------------------------------------------------------------------------------------------------------
  gaussian: gaussian/16.AVX2.b01
---------------------------------------------------------------------------------------------------------------------------------
    Properties:
      Chemistry related software

    This module can be loaded directly: module load gaussian/16.AVX2.b01


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